A NAC domain protein family contributing to the regulation of wood formation in poplar.
Identifieur interne : 003023 ( Main/Exploration ); précédent : 003022; suivant : 003024A NAC domain protein family contributing to the regulation of wood formation in poplar.
Auteurs : Misato Ohtani [Japon] ; Nobuyuki Nishikubo ; Bo Xu ; Masatoshi Yamaguchi ; Nobutaka Mitsuda ; Nadia Goué ; Fusun Shi ; Masaru Ohme-Takagi ; Taku DemuraSource :
- The Plant journal : for cell and molecular biology [ 1365-313X ] ; 2011.
Descripteurs français
- KwdFr :
- Activation de la transcription (MeSH), Agrobacterium tumefaciens (génétique), Agrobacterium tumefaciens (métabolisme), Arabidopsis (cytologie), Arabidopsis (génétique), Arabidopsis (métabolisme), Bois (croissance et développement), Bois (cytologie), Clonage moléculaire (MeSH), Données de séquences moléculaires (MeSH), Feuilles de plante (génétique), Feuilles de plante (métabolisme), Gènes de plante (MeSH), Phylogenèse (MeSH), Plant (croissance et développement), Plant (génétique), Plant (métabolisme), Populus (croissance et développement), Populus (cytologie), Populus (génétique), Populus (métabolisme), Pousses de plante (génétique), Pousses de plante (métabolisme), RT-PCR (méthodes), Régulation de l'expression des gènes végétaux (MeSH), Séquence nucléotidique (MeSH), Séquençage par oligonucléotides en batterie (MeSH), Végétaux génétiquement modifiés (croissance et développement), Végétaux génétiquement modifiés (cytologie), Végétaux génétiquement modifiés (génétique), Végétaux génétiquement modifiés (métabolisme), Xylème (croissance et développement), Xylème (cytologie), Xylème (métabolisme).
- MESH :
- croissance et développement : Bois, Plant, Populus, Végétaux génétiquement modifiés, Xylème.
- cytologie : Arabidopsis, Bois, Populus, Végétaux génétiquement modifiés, Xylème.
- génétique : Agrobacterium tumefaciens, Arabidopsis, Feuilles de plante, Plant, Populus, Pousses de plante, Végétaux génétiquement modifiés.
- métabolisme : Agrobacterium tumefaciens, Arabidopsis, Feuilles de plante, Plant, Populus, Pousses de plante, Végétaux génétiquement modifiés, Xylème.
- méthodes : RT-PCR.
- Activation de la transcription, Clonage moléculaire, Données de séquences moléculaires, Gènes de plante, Phylogenèse, Régulation de l'expression des gènes végétaux, Séquence nucléotidique, Séquençage par oligonucléotides en batterie.
English descriptors
- KwdEn :
- Agrobacterium tumefaciens (genetics), Agrobacterium tumefaciens (metabolism), Arabidopsis (cytology), Arabidopsis (genetics), Arabidopsis (metabolism), Base Sequence (MeSH), Cloning, Molecular (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (MeSH), Molecular Sequence Data (MeSH), Oligonucleotide Array Sequence Analysis (MeSH), Phylogeny (MeSH), Plant Leaves (genetics), Plant Leaves (metabolism), Plant Shoots (genetics), Plant Shoots (metabolism), Plants, Genetically Modified (cytology), Plants, Genetically Modified (genetics), Plants, Genetically Modified (growth & development), Plants, Genetically Modified (metabolism), Populus (cytology), Populus (genetics), Populus (growth & development), Populus (metabolism), Reverse Transcriptase Polymerase Chain Reaction (methods), Seedlings (genetics), Seedlings (growth & development), Seedlings (metabolism), Transcriptional Activation (MeSH), Wood (cytology), Wood (growth & development), Xylem (cytology), Xylem (growth & development), Xylem (metabolism).
- MESH :
- cytology : Arabidopsis, Plants, Genetically Modified, Populus, Wood, Xylem.
- genetics : Agrobacterium tumefaciens, Arabidopsis, Plant Leaves, Plant Shoots, Plants, Genetically Modified, Populus, Seedlings.
- growth & development : Plants, Genetically Modified, Populus, Seedlings, Wood, Xylem.
- metabolism : Agrobacterium tumefaciens, Arabidopsis, Plant Leaves, Plant Shoots, Plants, Genetically Modified, Populus, Seedlings, Xylem.
- methods : Reverse Transcriptase Polymerase Chain Reaction.
- Base Sequence, Cloning, Molecular, Gene Expression Regulation, Plant, Genes, Plant, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis, Phylogeny, Transcriptional Activation.
Abstract
Wood harvested from trees is one of the most widely utilized natural materials on our planet. Recent environmental issues have prompted an increase in the demand for wood, especially as a cost-effective and renewable resource for industry and energy, so it is important to understand the process of wood formation. In the present study, we focused on poplar (Populus trichocarpa) NAC domain protein genes which are homologous to well-known Arabidopsis transcription factors regulating the differentiation of xylem vessels and fiber cells. From phylogenetic analysis, we isolated 16 poplar NAC domain protein genes, and named them PtVNS (VND-, NST/SND- and SMB-related proteins) genes. Expression analysis revealed that 12 PtVNS (also called PtrWND) genes including both VND and NST groups were expressed in developing xylem tissue and phloem fiber, whereas in primary xylem vessels, only PtVNS/PtrWND genes of the VND group were expressed. By using the post-translational induction system of Arabidopsis VND7, a master regulator of xylem vessel element differentiation, many poplar genes functioning in xylem vessel differentiation downstream from NAC domain protein genes were identified. Transient expression assays showed the variation in PtVNS/PtrWND transactivation activity toward downstream genes, even between duplicate gene pairs. Furthermore, overexpression of PtVNS/PtrWND genes induced ectopic secondary wall thickening in poplar leaves as well as in Arabidopsis seedlings with different levels of induction efficiency according to the gene. These results suggest that wood formation in poplar is regulated by cooperative functions of the NAC domain proteins.
DOI: 10.1111/j.1365-313X.2011.04614.x
PubMed: 21649762
Affiliations:
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first="Masatoshi" last="Yamaguchi">Masatoshi Yamaguchi</name></author><author><name sortKey="Mitsuda, Nobutaka" sort="Mitsuda, Nobutaka" uniqKey="Mitsuda N" first="Nobutaka" last="Mitsuda">Nobutaka Mitsuda</name></author><author><name sortKey="Goue, Nadia" sort="Goue, Nadia" uniqKey="Goue N" first="Nadia" last="Goué">Nadia Goué</name></author><author><name sortKey="Shi, Fusun" sort="Shi, Fusun" uniqKey="Shi F" first="Fusun" last="Shi">Fusun Shi</name></author><author><name sortKey="Ohme Takagi, Masaru" sort="Ohme Takagi, Masaru" uniqKey="Ohme Takagi M" first="Masaru" last="Ohme-Takagi">Masaru Ohme-Takagi</name></author><author><name sortKey="Demura, Taku" sort="Demura, Taku" uniqKey="Demura T" first="Taku" last="Demura">Taku Demura</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2011">2011</date><idno type="RBID">pubmed:21649762</idno><idno type="pmid">21649762</idno><idno type="doi">10.1111/j.1365-313X.2011.04614.x</idno><idno 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Shoots (genetics)</term><term>Plant Shoots (metabolism)</term><term>Plants, Genetically Modified (cytology)</term><term>Plants, Genetically Modified (genetics)</term><term>Plants, Genetically Modified (growth & development)</term><term>Plants, Genetically Modified (metabolism)</term><term>Populus (cytology)</term><term>Populus (genetics)</term><term>Populus (growth & development)</term><term>Populus (metabolism)</term><term>Reverse Transcriptase Polymerase Chain Reaction (methods)</term><term>Seedlings (genetics)</term><term>Seedlings (growth & development)</term><term>Seedlings (metabolism)</term><term>Transcriptional Activation (MeSH)</term><term>Wood (cytology)</term><term>Wood (growth & development)</term><term>Xylem (cytology)</term><term>Xylem (growth & development)</term><term>Xylem (metabolism)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Activation de la transcription (MeSH)</term><term>Agrobacterium tumefaciens (génétique)</term><term>Agrobacterium tumefaciens (métabolisme)</term><term>Arabidopsis (cytologie)</term><term>Arabidopsis (génétique)</term><term>Arabidopsis (métabolisme)</term><term>Bois (croissance et développement)</term><term>Bois (cytologie)</term><term>Clonage moléculaire (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Feuilles de plante (génétique)</term><term>Feuilles de plante (métabolisme)</term><term>Gènes de plante (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Plant (croissance et développement)</term><term>Plant (génétique)</term><term>Plant (métabolisme)</term><term>Populus (croissance et développement)</term><term>Populus (cytologie)</term><term>Populus (génétique)</term><term>Populus (métabolisme)</term><term>Pousses de plante (génétique)</term><term>Pousses de plante (métabolisme)</term><term>RT-PCR (méthodes)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Séquence nucléotidique (MeSH)</term><term>Séquençage par oligonucléotides en batterie 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Modified</term><term>Populus</term><term>Seedlings</term><term>Xylem</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Reverse Transcriptase Polymerase Chain Reaction</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Agrobacterium tumefaciens</term><term>Arabidopsis</term><term>Feuilles de plante</term><term>Plant</term><term>Populus</term><term>Pousses de plante</term><term>Végétaux génétiquement modifiés</term><term>Xylème</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>RT-PCR</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Cloning, Molecular</term><term>Gene Expression Regulation, Plant</term><term>Genes, Plant</term><term>Molecular Sequence Data</term><term>Oligonucleotide Array Sequence Analysis</term><term>Phylogeny</term><term>Transcriptional Activation</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Activation de la transcription</term><term>Clonage moléculaire</term><term>Données de séquences moléculaires</term><term>Gènes de plante</term><term>Phylogenèse</term><term>Régulation de l'expression des gènes végétaux</term><term>Séquence nucléotidique</term><term>Séquençage par oligonucléotides en batterie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Wood harvested from trees is one of the most widely utilized natural materials on our planet. Recent environmental issues have prompted an increase in the demand for wood, especially as a cost-effective and renewable resource for industry and energy, so it is important to understand the process of wood formation. In the present study, we focused on poplar (Populus trichocarpa) NAC domain protein genes which are homologous to well-known Arabidopsis transcription factors regulating the differentiation of xylem vessels and fiber cells. From phylogenetic analysis, we isolated 16 poplar NAC domain protein genes, and named them PtVNS (VND-, NST/SND- and SMB-related proteins) genes. Expression analysis revealed that 12 PtVNS (also called PtrWND) genes including both VND and NST groups were expressed in developing xylem tissue and phloem fiber, whereas in primary xylem vessels, only PtVNS/PtrWND genes of the VND group were expressed. By using the post-translational induction system of Arabidopsis VND7, a master regulator of xylem vessel element differentiation, many poplar genes functioning in xylem vessel differentiation downstream from NAC domain protein genes were identified. Transient expression assays showed the variation in PtVNS/PtrWND transactivation activity toward downstream genes, even between duplicate gene pairs. Furthermore, overexpression of PtVNS/PtrWND genes induced ectopic secondary wall thickening in poplar leaves as well as in Arabidopsis seedlings with different levels of induction efficiency according to the gene. These results suggest that wood formation in poplar is regulated by cooperative functions of the NAC domain proteins.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21649762</PMID><DateCompleted><Year>2011</Year><Month>11</Month><Day>07</Day></DateCompleted><DateRevised><Year>2015</Year><Month>11</Month><Day>19</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1365-313X</ISSN><JournalIssue CitedMedium="Internet"><Volume>67</Volume><Issue>3</Issue><PubDate><Year>2011</Year><Month>Aug</Month></PubDate></JournalIssue><Title>The Plant journal : for cell and molecular biology</Title><ISOAbbreviation>Plant J</ISOAbbreviation></Journal><ArticleTitle>A NAC domain protein family contributing to the regulation of wood formation in poplar.</ArticleTitle><Pagination><MedlinePgn>499-512</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/j.1365-313X.2011.04614.x</ELocationID><Abstract><AbstractText>Wood harvested from trees is one of the most widely utilized natural materials on our planet. Recent environmental issues have prompted an increase in the demand for wood, especially as a cost-effective and renewable resource for industry and energy, so it is important to understand the process of wood formation. In the present study, we focused on poplar (Populus trichocarpa) NAC domain protein genes which are homologous to well-known Arabidopsis transcription factors regulating the differentiation of xylem vessels and fiber cells. From phylogenetic analysis, we isolated 16 poplar NAC domain protein genes, and named them PtVNS (VND-, NST/SND- and SMB-related proteins) genes. Expression analysis revealed that 12 PtVNS (also called PtrWND) genes including both VND and NST groups were expressed in developing xylem tissue and phloem fiber, whereas in primary xylem vessels, only PtVNS/PtrWND genes of the VND group were expressed. By using the post-translational induction system of Arabidopsis VND7, a master regulator of xylem vessel element differentiation, many poplar genes functioning in xylem vessel differentiation downstream from NAC domain protein genes were identified. Transient expression assays showed the variation in PtVNS/PtrWND transactivation activity toward downstream genes, even between duplicate gene pairs. Furthermore, overexpression of PtVNS/PtrWND genes induced ectopic secondary wall thickening in poplar leaves as well as in Arabidopsis seedlings with different levels of induction efficiency according to the gene. These results suggest that wood formation in poplar is regulated by cooperative functions of the NAC domain proteins.</AbstractText><CopyrightInformation>© 2011 The Authors. The Plant Journal © 2011 Blackwell Publishing Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ohtani</LastName><ForeName>Misato</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>RIKEN Biomass Engineering Program, Yokohama, Kanagawa 230-0045, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nishikubo</LastName><ForeName>Nobuyuki</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Bo</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Yamaguchi</LastName><ForeName>Masatoshi</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Mitsuda</LastName><ForeName>Nobutaka</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Goué</LastName><ForeName>Nadia</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Shi</LastName><ForeName>Fusun</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Ohme-Takagi</LastName><ForeName>Masaru</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Demura</LastName><ForeName>Taku</ForeName><Initials>T</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2011</Year><Month>06</Month><Day>07</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Plant J</MedlineTA><NlmUniqueID>9207397</NlmUniqueID><ISSNLinking>0960-7412</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D016960" MajorTopicYN="N">Agrobacterium tumefaciens</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017360" MajorTopicYN="N">Arabidopsis</DescriptorName><QualifierName UI="Q000166" MajorTopicYN="N">cytology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D003001" MajorTopicYN="N">Cloning, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="Y">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020411" MajorTopicYN="N">Oligonucleotide Array Sequence Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018520" MajorTopicYN="N">Plant Shoots</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D030821" MajorTopicYN="N">Plants, Genetically Modified</DescriptorName><QualifierName UI="Q000166" MajorTopicYN="N">cytology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000166" MajorTopicYN="N">cytology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020133" MajorTopicYN="N">Reverse Transcriptase Polymerase Chain Reaction</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D036226" MajorTopicYN="N">Seedlings</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015533" MajorTopicYN="N">Transcriptional Activation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName><QualifierName UI="Q000166" MajorTopicYN="N">cytology</QualifierName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D052584" MajorTopicYN="N">Xylem</DescriptorName><QualifierName UI="Q000166" MajorTopicYN="N">cytology</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2011</Year><Month>6</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2011</Year><Month>6</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2011</Year><Month>11</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">21649762</ArticleId><ArticleId IdType="doi">10.1111/j.1365-313X.2011.04614.x</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Japon</li></country></list><tree><noCountry><name sortKey="Demura, Taku" sort="Demura, Taku" uniqKey="Demura T" first="Taku" last="Demura">Taku Demura</name><name sortKey="Goue, Nadia" sort="Goue, Nadia" uniqKey="Goue N" first="Nadia" last="Goué">Nadia Goué</name><name sortKey="Mitsuda, Nobutaka" sort="Mitsuda, Nobutaka" uniqKey="Mitsuda N" first="Nobutaka" last="Mitsuda">Nobutaka Mitsuda</name><name sortKey="Nishikubo, Nobuyuki" sort="Nishikubo, Nobuyuki" uniqKey="Nishikubo N" first="Nobuyuki" last="Nishikubo">Nobuyuki Nishikubo</name><name sortKey="Ohme Takagi, Masaru" sort="Ohme Takagi, Masaru" uniqKey="Ohme Takagi M" first="Masaru" last="Ohme-Takagi">Masaru Ohme-Takagi</name><name sortKey="Shi, Fusun" sort="Shi, Fusun" uniqKey="Shi F" first="Fusun" last="Shi">Fusun Shi</name><name sortKey="Xu, Bo" sort="Xu, Bo" uniqKey="Xu B" first="Bo" last="Xu">Bo Xu</name><name sortKey="Yamaguchi, Masatoshi" sort="Yamaguchi, Masatoshi" uniqKey="Yamaguchi M" first="Masatoshi" last="Yamaguchi">Masatoshi Yamaguchi</name></noCountry><country name="Japon"><noRegion><name sortKey="Ohtani, Misato" sort="Ohtani, Misato" uniqKey="Ohtani M" first="Misato" last="Ohtani">Misato Ohtani</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
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Ou
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Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:21649762
|texte= A NAC domain protein family contributing to the regulation of wood formation in poplar.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:21649762" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
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